Bug
- [SYSMO-530] - Make text for item type (e.g. DataFile) consistent and human
- [SYSMO-584] - Assay previews need fixing when selecting an assay during data_file,model,sop creation
- [SYSMO-586] - Its possible to associate models to non modelling assays
- [SYSMO-587] - There are javascript functions in sharing.js that don't belong there
- [SYSMO-588] - SOP is wrong case in Upload/create dropdown
- [SYSMO-589] - Event Start date, End date and title need a red star to highlight required field
- [SYSMO-592] - See all link doesnt appear when running on production mode
- [SYSMO-593] - Version dropdown box on asset #show screens not aligned correctly
- [SYSMO-603] - Enabling google analytics doesn't work
- [SYSMO-604] - Add config support for enabling exception notifcations and the emails they are sent to
- [SYSMO-605] - 'similate' button in 'jws one stop' doesnt do anything when it is clicked
- [SYSMO-606] - can not connect to jws server when 'evaluate model' in 'simulate model in jws' is clicked
- [SYSMO-607] - Publication icon is too wishy washy and faint
- [SYSMO-610] - Unauthorized model appears in recent items
- [SYSMO-620] - Link from publication to model was lost when updating publication authors
- [SYSMO-648] - Login (or registering) OpenID no longer works when running with passenger phusion
Improvement
- [SYSMO-548] - Don't rely on file format for determining SBML or .DAT file formats for One Stop
- [SYSMO-556] - associate assay with datafile/sop/model/publication
- [SYSMO-595] - Align start and end date horizontally (side by side) for Event
- [SYSMO-615] - Remove "include other projects" from Assocate Assay, and add some explanatory text
New Feature
- [SYSMO-500] - Extend tagging to all asset types
- [SYSMO-535] - Update Integration with JWS Online OneStop to support annotations
Refinement
- [SYSMO-582] - encrypt and decrypt password in smtp setting
- [SYSMO-585] - Change username/password field names in admin form for email
- [SYSMO-601] - Sort organisms in left hand gadget alphabetically
- [SYSMO-649] - Merge across PIWKI plugin and adminstration
- [SYSMO-652] - Make the avatars a bit larger on the #show page
- [SYSMO-653] - Add a "Create study for this Investigation" button for investigation page
Task
- [SYSMO-524] - Move application configuration to the database and allow admin configures them
Sub-task
- [SYSMO-501] - Refactor tagging javascript and view partials
- [SYSMO-525] - Class reloading problem for the application configuration
- [SYSMO-536] - Update to show new SVG diagram
- [SYSMO-537] - Add boxes for annotations
- [SYSMO-538] - Add zoom and scroll to Schema diagram
- [SYSMO-539] - Integrate new page to allow MIRIAME annotations to be added
- [SYSMO-541] - Fix URN doubling problem
- [SYSMO-545] - Invoke the equivalent of rake solr:reindex when search is switched on.
- [SYSMO-552] - Optionally start the solr engine, or stop when changing the solr setting
- [SYSMO-594] - Fix name for One Stop page (currently Model Builder)
- [SYSMO-596] - Annotator needs some description text
- [SYSMO-597] - Author attribution layout needs improvements
- [SYSMO-599] - create browse button to allow the user to select the header image file
- [SYSMO-555] - Detect if running with Passenger and change restart text and button accordingly