For an overview of the SEEK System and the issues surrounding its development, see:
- Wolstencroft K, Owen S, du Preez F, Krebs O, Mueller W, Goble CA, Snoep JL (2011) The SEEK: A Platform for Sharing Data and Models in Systems Biology, Methods in Enzymology, Volume 500: 629-655
For a description of the RightField tool and related data annotation and curation work, see:
- Wolstencroft K, Owen S, Horridge M, Jupp S, Krebs O, Snoep J, du Preez F, Mueller W, Stevens R,Goble CA (2012) Stealthy annotation of experimental biology by spreadsheets. Concurrency and Computation, Practice and Experience, Special Issue. Available online 10 October 2012, DOI: 10.1002/cpe.2941
- Jupp S, Horridge M, Iannone L, Klein J, Owen S, Schanstra J, Stevens R, Wolstencroft K (2012) Populous: A tool for populating ontology templates. BMC Bioinformatics, Jan 25;13 Suppl 1:S5
- Wolstencroft K, Owen S, Horridge M, Krebs O, Mueller W, Snoep JL, du Preez F, Goble CA (2011), RightField: Embedding ontology annotation in spreadsheets, Bioinformatics (2011) 15;27(14):pp2021-2
For all other work relating to SEEK and RightField, see
- Sansone S-A, Rocca-Serra P, Field D ... Goble C, ... Wolstencroft K (2012) et al Toward interoperable bioscience data Nature Genetics 44: 121–126 doi:10.1038/ng.1054
- Goble CA, De Roure D and Bechhofer S, Accelerating Scientists’ Knowledge Turns, Proc The 3rd International Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (ICK3) Paris, LNCS Springer Verlag, to appear
- Goble CA, Wolstencroft K, Bechhofer S The Semantic Web and Interoperability in Systems Biology iEncyclopedia of Systems Biology, Springer Verlag, to appear
- Bechhofer S, Buchan I, De Roure D, Missier P, Ainsworth J, Bhagat J, Couch P, Cruickshank D, Delderfield M, Dunlop I, Gamble M, Michaelides D, Owen S, Newman D, Sufi S, Goble C (2011) Why Linked Data is Not Enough for Scientists, Future Generation Computer Systems. Available online 19 August 2011, ISSN 0167-739X, 10.1016/j.future.2011.08.004.
- du Preez, F.B., Snoep, J.L. (2011) JWS Online Encyclopedia of Systems Biology, Springer Verlag, to appear
- Waltemath, D., Adams, R., Bergmann, F.T., Hucka, M., Kolpakov, F., Miller, A.K., Moraru, I.I., Nickerson, D., Sahle, S., Snoep, J.L. and Le Novère, N. (2011) Reproducible computational biology experiments with SED-ML—The Simulation Experiment Description Markup Language BMC Systems Biology 5:198
